[PDF][PDF] A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

P He, K Lim, D Sun, JP Pett, Q Jeng, K Polanski… - Cell, 2022 - cell.com
P He, K Lim, D Sun, JP Pett, Q Jeng, K Polanski, Z Dong, L Bolt, L Richardson, L Mamanova…
Cell, 2022cell.com
We present a multiomic cell atlas of human lung development that combines single-cell RNA
and ATAC sequencing, high-throughput spatial transcriptomics, and single-cell imaging.
Coupling single-cell methods with spatial analysis has allowed a comprehensive cellular
survey of the epithelial, mesenchymal, endothelial, and erythrocyte/leukocyte compartments
from 5–22 post-conception weeks. We identify previously uncharacterized cell states in all
compartments. These include developmental-specific secretory progenitors and a subtype of …
Summary
We present a multiomic cell atlas of human lung development that combines single-cell RNA and ATAC sequencing, high-throughput spatial transcriptomics, and single-cell imaging. Coupling single-cell methods with spatial analysis has allowed a comprehensive cellular survey of the epithelial, mesenchymal, endothelial, and erythrocyte/leukocyte compartments from 5–22 post-conception weeks. We identify previously uncharacterized cell states in all compartments. These include developmental-specific secretory progenitors and a subtype of neuroendocrine cell related to human small cell lung cancer. Our datasets are available through our web interface (https://lungcellatlas.org). To illustrate its general utility, we use our cell atlas to generate predictions about cell-cell signaling and transcription factor hierarchies which we rigorously test using organoid models.
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